Advances in Bioinformatics and Computational Biology: Second Brazilian Symposium on Bioinformatics, BSB 2007, Angra dos Reis, Brazil, August 29-31, 2007, Proceedings

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Marie-France Sagot, Maria Emilia M.T. Walter
Springer, Aug 14, 2007 - Science - 177 pages

This book constitutes the refereed proceedings of the Second Brazilian Symposium on Bioinformatics, BSB 2007, held in Angra dos Reis, Brazil, in August 2007, co-located with IWGD 2007, the International Workshop on Genomic Databases. The papers address a broad range of current topics in computational biology and bioinformatics.

 

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Contents

Automating Molecular Docking with Explicit ReceptorFlexibility Using Scientific Workflows
1
Gene Set Enrichment Analysis UsingNonparametric Scores
12
Preliminary Results
22
MultiObjective Clustering Ensemble with PriorKnowledge
34
Biological Sequence Comparison Application inHeterogeneous Environments with DynamicProgramming Algorithms
46
New EST Trimming ProcedureApplied to SUCEST Sequences
57
A Method for Inferring Biological FunctionsUsing Homologous Genes Among ThreeGenomes
69
Validating Gene Clusterings by SelectingInformative Gene Ontology Terms with MutualInformation
81
A MultiobjectiveApproach
113
Comparing Several Approaches for HierarchicalClassification of Proteins with Decision Trees
126
High Efficiency on Prediction of Translation InitiationSite TIS of RefSeq Sequences
138
Outlining a Strategy for Screening Noncoding RNAs ona Transcriptome Through Support Vector Machines
149
Mapping Contigs onto Reference Genomes
153
Genetic Algorithm for Finding Multiple LowEnergy Conformations of Poly AlanineSequences Under an Atomistic Protein Model
163
Identification of the Putative Class 3 R Genes in Coffeaarabica from CafEST Database
171
Author Index
176

An Optimized Distance Function for Comparison ofProtein Binding Sites
93
Towards anIntermediate Model Between the Edit and theLapcs Problems
101

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Page 45 - Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Staudt LM, et al. (2000). Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.

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